My son has purchased a house and will be moving out FINALLY!! Unfortunately he will be taking the Prusa with him. Fortunately that will give me the excuse to build a Voron.
I have a number of reasons for investigating the water cooling option. It is my assessment that the Voron is a well designed and engineered machine tool, so any possible improvement is going to be incremental. I am chasing ants looking for improvements in motion control and process consistency (chamber temp control).
It is my observation that most fans have axial play on the rotating part. If acceleration of the head causes the fan to move, it would be like having a tiny hammer tapping the head and that would not be a good thing. Is this a significant issue? I won't know until I take measurements on a Voron. If the problem is real, it won't directly show up on the input shaper plots because an impulse (tapping) seen in the frequency domain appears as broadband noise. I doubt the input shaper could directly detect or compensate for this effect.
An impulse acts as a unity function and will excite all existing resonance modes. An input shaper plot would show an increase in amplitude across the entire spectrum. The changes in amplitude of each vibration mode will depend on the Q of each resonance mode. So although the impulse energy will be evenly spread across the frequency spectrum, the amplitude response of each mode will vary. I expect the input shaper would detect and compensate for this but impulse energy will degrade the signal to noise ratio seen by the input shaper.
Note that I haven't read any technical info on the input shaper, so I am making huge assumptions about how it works based on my knowledge of control system engineering.
A correctly engineered water heat exchanger and tubing should reduce moving weight compared to a fan. That can only be a good thing for motion control. For the same reason, I will look at installing a remote part cooling fan. Nothing that hasn't been done before.
I have a workshop full of machine tools just waiting to make the parts I need. I can make custom cooling components at low cost. This sort of project lets me justify their existence to SWMBO.
I could say that I am in the pursuit of engineering excellence, but that would just be pretentious ego polishing. Really it's just for the cool bling and bragging rights. I advise young engineers, if you spend too much time picking up ants, you will get trampled by the elephants. I am too old to care about accusations of hypocrisy.